Using Inverted SPIM (iSPIM) to study neural development in C. elegans
Inverted Selective Plane Illumination Microscopy (iSPIM) is a type of light sheet fluorescence microscopy technique developed by Yicong Wu and Hari Shroff (both at the National Institute of Biomedical Imaging and Bioengineering (NIBIB)) and their colleagues at Yale University and Memorial Sloan-Kettering Cancer Centre which adds plane illumination functionality to any inverted microscope (PNAS, USA, 2011, Oct 25; 108 (43) 17708-17713). This light sheet approach is used to image the neural development of the nematode C. elegans. iSPIM allows one to achieve very fast non-invasive imaging of living samples, facilitating the inspection of live neurodevelopmental events and paving the way for a 4D dynamic neurodevelopmental atlas in C. elegans. The iSPIM sample is prepared on a coverslip, the same as it is for conventional microscopy, therefore making this a transferable method for many neurobiology and developmental laboratories.
With only 302 neurons, ~7000 synapses and an available and comprehensive connectivity map, C. elegans is an excellent model for this research. The molecular mechanisms that control neurodevelopment decisions in the nematode are well conserved throughout evolution and studies in C. elegans have contributed to a clear understanding of neuroblast migration and axon guidance. As described in (PNAS, USA, 2011, Oct 25; 108 (43) 17708-17713) the technique of iSPIM allowed Shroff and his team to continuously image the nematode embryo, scanning volumes every 2 s for the entire 14 h of embryogenesis with no detectable phototoxicity. Additionally, two colour iSPIM images were merged to visualize neurodevelopmental dynamics.
Four neurons were investigated during early embryogenesis, each expressing transcription factor CEH-10/Chx10 and the cell migration and neurite outgrowth decisions made by these neurons throughout embryogenesis was also examined. The four neurons investigated were CANL, CANR, RMED and ALA. Shroff and his team found that CANs use somal translocation and amoeboid movement as they translocate to their final position (Fig 1). Using iSPIM to image these neurons they were also able to visualize axon guidance and growth cone dynamics as neurites circumnavigate the nerve ring of the body of the worm to reach their targets.
The PNAS article states that Shroff and his colleagues chose to develop iSPIM for their studies for two main reasons. Firstly, neurulation in the embryo is accompanied by fast movement and twitching, requiring faster volumetric imaging rates to avoid the artifacts induced by motion blur. Secondly, conventional 4D imaging technologies such as point scanning confocal or 2-photon microscopes fail to provide the necessary signal rates. To overcome these hurdles Shroff and his team developed iSPIM which is fast, minimally invasive and can be used to study nematode embryos.
iSPIM replaces the illumination pillar of an inverted microscope with a mechanical housing for two objectives that illuminate the sample with a light sheet and collect the resulting fluorescence (Fig 2). By rapidly translating the light sheet through the sample, rapid volumetric image collection is enabled without requiring specimen movement. The choice of objectives is mechanically constrained by the need to place them at 90° without steric interference between each other or the sample. High NA (0.8) objectives with long focal lengths (3.5 mm) were chosen for this particular study. The samples can be mounted in the conventional way on rectangular coverslips and can be translated using an automated 3D stage.
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Andor Solutions for iSPIM
Both EMCCD and sCMOS cameras can be used for light sheet microscopy techniques. For this particular study the researcher chose to use an EMCCD for its high resolution, speed and sensitivity. The iXon Ultra 897 works well for iSPIM where the electron multiplication can be utilised for weakly fluorescent samples and the fast frame rates with the “Crop Sensor” mode allow the capture of dynamic events. Facilitated by a fundamental redesign, the new iXon Ultra platform takes the popular back-illuminated 512 x 512 frame transfer sensor and overclocks readout to 17 MHz, pushing speed performance to an outstanding 56 fps (full frame), whilst maintaining quantitative stability throughout. The significant speed boost offered in the iXon Ultra 897 facilitates a new level of temporal resolution to be attained, ideal for speed challenged low-light applications such as iSPIM.
However, the Neo and Zyla sCMOS cameras would work just as well. The Neo and the Zyla have a 5.5-megapixel sensor that offers a large field of view and high resolution without compromising read noise or frame rate. The small pixel size of 6.5 micrometers ensures sufficient oversampling of the pointspread-function, even for objectives with low magnification (e.g. 10x NA 0.3; 20x NA 0.5). The read noise is very low, even when compared with the highest-performance slow readout CCDs. The Neo can achieve a read noise down to 1 e– rms, while the Zyla has a read noise of 1.2e- rms, both without signal amplification, while reading out 5.5 megapixels at 30 & 100 frames per second respectively, thereby facilitating the live acquisition of dynamic events which take place during embryogenesis.